PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000749.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 242aa    MW: 26454.9 Da    PI: 6.0793
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000749.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-204897255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a++ a++k++g
  Itr_sc000749.1_g00006.1 48 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAALAYDDAALKFKG 97
                             7********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-3347106IPR001471AP2/ERF domain
SMARTSM003801.1E-3948111IPR001471AP2/ERF domain
CDDcd000184.77E-2248106No hitNo description
PfamPF008476.8E-144897IPR001471AP2/ERF domain
PROSITE profilePS5103224.84348105IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2348106IPR016177DNA-binding domain
PRINTSPR003676.7E-124960IPR001471AP2/ERF domain
PRINTSPR003676.7E-127187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEASPEKTHD FSGSDDSSSV LTGIVTSASP SPTAAAQPVQ EQGNVRRHYR GVRQRPWGKW  60
AAEIRDPKKA ARVWLGTFDT AEDAALAYDD AALKFKGSKA KLNFPERVQG KTELRYVSTG  120
TGGTAGGAPS AVDHHISGHH QLPAMPSPET YPYLQQYAQL LSSSDAEFPY LTSALYNQAS  180
FSQPSSLPPA PATFPPPPTA PSQQQDYFPY FPSQFENFPS SDYHNYYTKG FDDPNNPNPN  240
HD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2847108466ATERF1
3gcc_A7e-2847108466ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086884.18e-73PREDICTED: ethylene-responsive transcription factor ERF113 isoform X1
SwissprotQ9LYU32e-43EF113_ARATH; Ethylene-responsive transcription factor ERF113
TrEMBLD8VD411e-60D8VD41_ACTDE; Ethylene response factor 14
STRINGPOPTR_0001s12990.11e-51(Populus trichocarpa)
STRINGPOPTR_0003s16090.17e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.14e-33related to AP2 6l